IL_8B5L_110

3D structure

PDB id

8B5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

CUG*CG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B5L_110 not in the Motif Atlas

Homologous match to IL_8C3A_091

Geometric discrepancy: 0.1292

The information below is about IL_8C3A_091

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_05035.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

38

Unit IDs

8B5L|1|5|C|3440
8B5L|1|5|U|3441
8B5L|1|5|G|3442
*
8B5L|1|5|C|3473
8B5L|1|5|G|3474

Current chains

Chain 5

28S rRNA

Nearby chains

Chain A

Ribosomal protein L8