IL_8B5L_119

3D structure

PDB id

8B5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

GA*UACC

Length

6 nucleotides

Bulged bases

8B5L|1|5|A|4131

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B5L_119 not in the Motif Atlas

Homologous match to IL_5TBW_094

Geometric discrepancy: 0.0617

The information below is about IL_5TBW_094

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

8B5L|1|5|G|3648
8B5L|1|5|A|3649
*
8B5L|1|5|U|4130
8B5L|1|5|A|4131
8B5L|1|5|C|4132
8B5L|1|5|C|4133

Current chains

Chain 5

28S rRNA

Nearby chains

Chain A

Ribosomal protein L8