IL_8B5L_123
3D structure
- PDB id
- 8B5L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.86 Å
Loop
- Sequence
- GUGAGGC*GCUC
- Length
- 11 nucleotides
- Bulged bases
- 8B5L|1|5|G|3812, 8B5L|1|5|C|3908, 8B5L|1|5|U|3909
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8B5L_123 not in the Motif Atlas
- Homologous match to IL_8C3A_106
- Geometric discrepancy: 0.1979
- The information below is about IL_8C3A_106
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_74114.1
- Basepair signature
- cWW-cWS-cWW-L-R
- Number of instances in this motif group
- 2
Unit IDs
8B5L|1|5|G|3810
8B5L|1|5|U|3811
8B5L|1|5|G|3812
8B5L|1|5|A|3813
8B5L|1|5|G|3814
8B5L|1|5|G|3815
8B5L|1|5|C|3816
*
8B5L|1|5|G|3907
8B5L|1|5|C|3908
8B5L|1|5|U|3909
8B5L|1|5|C|3910
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain A
- Ribosomal protein L8
- Chain G
- 60S ribosomal protein L7a
- Chain X
- Ribosomal_L23eN domain-containing protein
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