IL_8B5L_133

3D structure

PDB id

8B5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

CCA(1MA)G*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 1MA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B5L_133 not in the Motif Atlas

Homologous match to IL_8C3A_114

Geometric discrepancy: 0.1174

The information below is about IL_8C3A_114

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65585.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

8B5L|1|5|C|4158
8B5L|1|5|C|4159
8B5L|1|5|A|4160
8B5L|1|5|1MA|4161
8B5L|1|5|G|4162
*
8B5L|1|5|C|4172
8B5L|1|5|G|4173
8B5L|1|5|A|4174
8B5L|1|5|C|4175
8B5L|1|5|G|4176

Current chains

Chain 5

28S rRNA

Nearby chains

Chain I

Ribosomal protein L10

Chain m

Ubiquitin-60S ribosomal protein L40