IL_8B5L_138

3D structure

PDB id

8B5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

UUG*CCAAG

Length

8 nucleotides

Bulged bases

8B5L|1|5|A|4234

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B5L_138 not in the Motif Atlas

Geometric match to IL_3DD2_004

Geometric discrepancy: 0.3797

The information below is about IL_3DD2_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_55516.2

Basepair signature

cWW-cWW-cSH-cWW

Number of instances in this motif group

7

Unit IDs

8B5L|1|5|U|4214
8B5L|1|5|U|4215
8B5L|1|5|G|4216
*
8B5L|1|5|C|4231
8B5L|1|5|C|4232
8B5L|1|5|A|4233
8B5L|1|5|A|4234
8B5L|1|5|G|4235

Current chains

Chain 5

28S rRNA

Nearby chains

Chain H

60S ribosomal protein L9

Chain O

60S ribosomal protein L13a

Chain m

Ubiquitin-60S ribosomal protein L40