IL_8B5L_142

3D structure

PDB id

8B5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

8B5L|1|5|A|4294

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B5L_142 not in the Motif Atlas

Geometric match to IL_7RQB_101

Geometric discrepancy: 0.203

The information below is about IL_7RQB_101

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_37497.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

118

Unit IDs

8B5L|1|5|C|4283
8B5L|1|5|G|4284
*
8B5L|1|5|C|4293
8B5L|1|5|A|4294
8B5L|1|5|G|4295

Current chains

Chain 5

28S rRNA

Nearby chains

Chain A

Ribosomal protein L8