IL_8B5L_144

3D structure

PDB id

8B5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

CCAU*AGGCG

Length

9 nucleotides

Bulged bases

8B5L|1|5|C|4466

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B5L_144 not in the Motif Atlas

Geometric match to IL_5J7L_256

Geometric discrepancy: 0.3149

The information below is about IL_5J7L_256

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

8B5L|1|5|C|4328
8B5L|1|5|C|4329
8B5L|1|5|A|4330
8B5L|1|5|U|4331
*
8B5L|1|5|A|4463
8B5L|1|5|G|4464
8B5L|1|5|G|4465
8B5L|1|5|C|4466
8B5L|1|5|G|4467

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

Ribosomal protein L3

Chain O

60S ribosomal protein L13a