IL_8B5L_154
3D structure
- PDB id
- 8B5L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.86 Å
Loop
- Sequence
- CCUCGGAUAG*UGCGGAGAG
- Length
- 19 nucleotides
- Bulged bases
- 8B5L|1|5|C|4504, 8B5L|1|5|U|4505, 8B5L|1|5|A|4511, 8B5L|1|5|G|4609, 8B5L|1|5|C|4610, 8B5L|1|5|G|4612, 8B5L|1|5|A|4615
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8B5L|1|5|C|4503
8B5L|1|5|C|4504
8B5L|1|5|U|4505
8B5L|1|5|C|4506
8B5L|1|5|G|4507
8B5L|1|5|G|4508
8B5L|1|5|A|4509
8B5L|1|5|U|4510
8B5L|1|5|A|4511
8B5L|1|5|G|4512
*
8B5L|1|5|U|4608
8B5L|1|5|G|4609
8B5L|1|5|C|4610
8B5L|1|5|G|4611
8B5L|1|5|G|4612
8B5L|1|5|A|4613
8B5L|1|5|G|4614
8B5L|1|5|A|4615
8B5L|1|5|G|4616
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain E
- 60S ribosomal protein L6
- Chain H
- 60S ribosomal protein L9
- Chain M
- 60S ribosomal protein L14
- Chain O
- 60S ribosomal protein L13a
- Chain S
- 60S ribosomal protein L18a
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