IL_8B5L_187
3D structure
- PDB id
- 8B5L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.86 Å
Loop
- Sequence
- (PSU)CA(A2M)AGU*AAUGAAG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU, A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8B5L_187 not in the Motif Atlas
- Homologous match to IL_8P9A_316
- Geometric discrepancy: 0.1782
- The information below is about IL_8P9A_316
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_65359.1
- Basepair signature
- cWW-tSH-L-R-L-R-L-R-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
8B5L|1|5|PSU|3447
8B5L|1|5|C|3448
8B5L|1|5|A|3449
8B5L|1|5|A2M|3450
8B5L|1|5|A|3451
8B5L|1|5|G|3452
8B5L|1|5|U|3453
*
8B5L|1|5|A|3464
8B5L|1|5|A|3465
8B5L|1|5|U|3466
8B5L|1|5|G|3467
8B5L|1|5|A|3468
8B5L|1|5|A|3469
8B5L|1|5|G|3470
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain A
- Ribosomal protein L8
- Chain i
- 60S ribosomal protein L36
Coloring options: