IL_8B6C_024

3D structure

PDB id

8B6C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of ribosome-Sec61 in complex with cyclotriazadisulfonamide derivative CK147

Experimental method

ELECTRON MICROSCOPY

Resolution

2.79 Å

Loop

Sequence

GG*CGACC

Length

7 nucleotides

Bulged bases

8B6C|1|5|G|660, 8B6C|1|5|A|661, 8B6C|1|5|C|662

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B6C_024 not in the Motif Atlas

Geometric match to IL_1R3E_002

Geometric discrepancy: 0.2001

The information below is about IL_1R3E_002

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_05670.1

Basepair signature

cWW-cWW

Number of instances in this motif group

9

Unit IDs

8B6C|1|5|G|488
8B6C|1|5|G|489
*
8B6C|1|5|C|659
8B6C|1|5|G|660
8B6C|1|5|A|661
8B6C|1|5|C|662
8B6C|1|5|C|663

Current chains

Chain 5

28S rRNA

Nearby chains

Chain C

60S ribosomal protein L4

Chain Q

eL18

Chain r

60S ribosomal protein L28