IL_8B6C_068
3D structure
- PDB id
- 8B6C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of ribosome-Sec61 in complex with cyclotriazadisulfonamide derivative CK147
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.79 Å
Loop
- Sequence
- AC(B8H)U*AACU
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: B8H
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8B6C_068 not in the Motif Atlas
- Geometric match to IL_1L9A_005
- Geometric discrepancy: 0.2776
- The information below is about IL_1L9A_005
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
8B6C|1|5|A|1797
8B6C|1|5|C|1798
8B6C|1|5|B8H|1799
8B6C|1|5|U|1800
*
8B6C|1|5|A|1812
8B6C|1|5|A|1813
8B6C|1|5|C|1814
8B6C|1|5|U|1815
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 7
- 5S ribosomal RNA; 5S rRNA
- Chain F
- 60S ribosomal protein L7
- Chain I
- Ribosomal protein L10
- Chain b
- 60S ribosomal protein L29
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