IL_8B6C_075
3D structure
- PDB id
- 8B6C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of ribosome-Sec61 in complex with cyclotriazadisulfonamide derivative CK147
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.79 Å
Loop
- Sequence
- GACCCCAGAAAA*UGAAAAUGGAUGGCGC
- Length
- 28 nucleotides
- Bulged bases
- 8B6C|1|5|C|1874, 8B6C|1|5|A|1980
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8B6C_075 not in the Motif Atlas
- Geometric match to IL_5TBW_052
- Geometric discrepancy: 0.167
- The information below is about IL_5TBW_052
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53762.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
8B6C|1|5|G|1872
8B6C|1|5|A|1873
8B6C|1|5|C|1874
8B6C|1|5|C|1875
8B6C|1|5|C|1876
8B6C|1|5|C|1877
8B6C|1|5|A|1878
8B6C|1|5|G|1879
8B6C|1|5|A|1880
8B6C|1|5|A|1881
8B6C|1|5|A|1882
8B6C|1|5|A|1883
*
8B6C|1|5|U|1977
8B6C|1|5|G|1978
8B6C|1|5|A|1979
8B6C|1|5|A|1980
8B6C|1|5|A|1981
8B6C|1|5|A|1982
8B6C|1|5|U|1983
8B6C|1|5|G|1984
8B6C|1|5|G|1985
8B6C|1|5|A|1986
8B6C|1|5|U|1987
8B6C|1|5|G|1988
8B6C|1|5|G|1989
8B6C|1|5|C|1990
8B6C|1|5|G|1991
8B6C|1|5|C|1992
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 7
- 5S ribosomal RNA; 5S rRNA
- Chain B
- Ribosomal protein L3
- Chain I
- Ribosomal protein L10
- Chain O
- 60S ribosomal protein L13a
- Chain f
- 60S ribosomal protein L35a
- Chain m
- 60S ribosomal protein L40
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