IL_8B6C_132

3D structure

PDB id

8B6C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of ribosome-Sec61 in complex with cyclotriazadisulfonamide derivative CK147

Experimental method

ELECTRON MICROSCOPY

Resolution

2.79 Å

Loop

Sequence

GUG*UUUUU

Length

8 nucleotides

Bulged bases

8B6C|1|5|U|4183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B6C_132 not in the Motif Atlas

Geometric match to IL_5TBW_105

Geometric discrepancy: 0.0892

The information below is about IL_5TBW_105

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

8B6C|1|5|G|4151
8B6C|1|5|U|4152
8B6C|1|5|G|4153
*
8B6C|1|5|U|4181
8B6C|1|5|U|4182
8B6C|1|5|U|4183
8B6C|1|5|U|4184
8B6C|1|5|U|4185

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

Ribosomal protein L3

Chain I

Ribosomal protein L10