IL_8B6C_135

3D structure

PDB id

8B6C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of ribosome-Sec61 in complex with cyclotriazadisulfonamide derivative CK147

Experimental method

ELECTRON MICROSCOPY

Resolution

2.79 Å

Loop

Sequence

CUC*GUG(A2M)G

Length

8 nucleotides

Bulged bases

8B6C|1|5|G|4268

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B6C_135 not in the Motif Atlas

Homologous match to IL_8C3A_116

Geometric discrepancy: 0.0702

The information below is about IL_8C3A_116

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_54650.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

8B6C|1|5|C|4202
8B6C|1|5|U|4203
8B6C|1|5|C|4204
*
8B6C|1|5|G|4266
8B6C|1|5|U|4267
8B6C|1|5|G|4268
8B6C|1|5|A2M|4269
8B6C|1|5|G|4270

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

Ribosomal protein L3

Chain V

60S ribosomal protein L23