IL_8B6C_138

3D structure

PDB id

8B6C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of ribosome-Sec61 in complex with cyclotriazadisulfonamide derivative CK147

Experimental method

ELECTRON MICROSCOPY

Resolution

2.79 Å

Loop

Sequence

UUG*CCAAG

Length

8 nucleotides

Bulged bases

8B6C|1|5|A|4234

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B6C_138 not in the Motif Atlas

Geometric match to IL_3DD2_004

Geometric discrepancy: 0.3798

The information below is about IL_3DD2_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_09353.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

8B6C|1|5|U|4214
8B6C|1|5|U|4215
8B6C|1|5|G|4216
*
8B6C|1|5|C|4231
8B6C|1|5|C|4232
8B6C|1|5|A|4233
8B6C|1|5|A|4234
8B6C|1|5|G|4235

Current chains

Chain 5

28S rRNA

Nearby chains

Chain H

60S ribosomal protein L9

Chain O

60S ribosomal protein L13a

Chain m

60S ribosomal protein L40