IL_8B6C_188
3D structure
- PDB id
- 8B6C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of ribosome-Sec61 in complex with cyclotriazadisulfonamide derivative CK147
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.79 Å
Loop
- Sequence
- C(5MC)AAAUGCCUC(OMG)*CGCG
- Length
- 16 nucleotides
- Bulged bases
- 8B6C|1|5|A|3517, 8B6C|1|5|C|3523, 8B6C|1|5|C|3542
- QA status
- Modified nucleotides: 5MC, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8B6C_188 not in the Motif Atlas
- Homologous match to IL_8C3A_095
- Geometric discrepancy: 0.2909
- The information below is about IL_8C3A_095
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_66080.1
- Basepair signature
- cWW-cWW-tSH-L-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
8B6C|1|5|C|3513
8B6C|1|5|5MC|3514
8B6C|1|5|A|3515
8B6C|1|5|A|3516
8B6C|1|5|A|3517
8B6C|1|5|U|3518
8B6C|1|5|G|3519
8B6C|1|5|C|3520
8B6C|1|5|C|3521
8B6C|1|5|U|3522
8B6C|1|5|C|3523
8B6C|1|5|OMG|3524
*
8B6C|1|5|C|3540
8B6C|1|5|G|3541
8B6C|1|5|C|3542
8B6C|1|5|G|3543
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain n
- 60S ribosomal protein L41
Coloring options: