IL_8B6C_189
3D structure
- PDB id
- 8B6C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of ribosome-Sec61 in complex with cyclotriazadisulfonamide derivative CK147
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.79 Å
Loop
- Sequence
- GCGAGC*GGCUCU
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8B6C_189 not in the Motif Atlas
- Geometric match to IL_5TBW_476
- Geometric discrepancy: 0.2905
- The information below is about IL_5TBW_476
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_31007.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 5
Unit IDs
8B6C|1|5|G|3823
8B6C|1|5|C|3824
8B6C|1|5|G|3825
8B6C|1|5|A|3826
8B6C|1|5|G|3827
8B6C|1|5|C|3828
*
8B6C|1|5|G|3836
8B6C|1|5|G|3837
8B6C|1|5|C|3838
8B6C|1|5|U|3839
8B6C|1|5|C|3840
8B6C|1|5|U|3841
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain A
- Ribosomal protein L8
- Chain G
- 60S ribosomal protein L7a
- Chain g
- 60S ribosomal protein L34
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