IL_8B6C_195
3D structure
- PDB id
- 8B6C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of ribosome-Sec61 in complex with cyclotriazadisulfonamide derivative CK147
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.79 Å
Loop
- Sequence
- UGUA(PSU)(OMG)*CGAAG
- Length
- 11 nucleotides
- Bulged bases
- 8B6C|1|5|U|4380, 8B6C|1|5|PSU|4382
- QA status
- Modified nucleotides: PSU, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8B6C_195 not in the Motif Atlas
- Homologous match to IL_8P9A_346
- Geometric discrepancy: 0.4503
- The information below is about IL_8P9A_346
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_98200.1
- Basepair signature
- cWW-L-R-tHW-L-cWW
- Number of instances in this motif group
- 3
Unit IDs
8B6C|1|5|U|4378
8B6C|1|5|G|4379
8B6C|1|5|U|4380
8B6C|1|5|A|4381
8B6C|1|5|PSU|4382
8B6C|1|5|OMG|4383
*
8B6C|1|5|C|4408
8B6C|1|5|G|4409
8B6C|1|5|A|4410
8B6C|1|5|A|4411
8B6C|1|5|G|4412
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain B
- Ribosomal protein L3
- Chain W
- Ribosomal protein L24
- Chain d
- 60S ribosomal protein L31
Coloring options: