IL_8B7Y_012

3D structure

PDB id

8B7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the E.coli 70S ribosome in complex with the antibiotic Myxovalargin B.

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

8B7Y|1|C|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B7Y_012 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.123

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

8B7Y|1|C|G|147
8B7Y|1|C|G|148
8B7Y|1|C|A|149
8B7Y|1|C|U|150
8B7Y|1|C|A|151
8B7Y|1|C|A|152
8B7Y|1|C|C|153
*
8B7Y|1|C|G|168
8B7Y|1|C|C|169
8B7Y|1|C|U|170
8B7Y|1|C|A|171
8B7Y|1|C|A|172
8B7Y|1|C|U|173
8B7Y|1|C|A|174
8B7Y|1|C|C|175

Current chains

Chain C

16S ribosomal RNA

Nearby chains

Chain y

30S ribosomal protein S20