IL_8B7Y_013

3D structure

PDB id

8B7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the E.coli 70S ribosome in complex with the antibiotic Myxovalargin B.

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAUUAG*CGACGAUC

Length

14 nucleotides

Bulged bases

8B7Y|1|C|U|244, 8B7Y|1|C|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B7Y_013 not in the Motif Atlas

Homologous match to IL_5J7L_014

Geometric discrepancy: 0.1164

The information below is about IL_5J7L_014

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

8B7Y|1|C|G|242
8B7Y|1|C|A|243
8B7Y|1|C|U|244
8B7Y|1|C|U|245
8B7Y|1|C|A|246
8B7Y|1|C|G|247
*
8B7Y|1|C|C|277
8B7Y|1|C|G|278
8B7Y|1|C|A|279
8B7Y|1|C|C|280
8B7Y|1|C|G|281
8B7Y|1|C|A|282
8B7Y|1|C|U|283
8B7Y|1|C|C|284

Current chains

Chain C

16S ribosomal RNA

Nearby chains

Chain q

30S ribosomal protein S12

Chain v

30S ribosomal protein S17