IL_8B7Y_073

3D structure

PDB id

8B7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the E.coli 70S ribosome in complex with the antibiotic Myxovalargin B.

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCAGUAG*CGAACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B7Y_073 not in the Motif Atlas

Homologous match to IL_5J7L_251

Geometric discrepancy: 0.086

The information below is about IL_5J7L_251

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_26307.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

8B7Y|1|I|C|239
8B7Y|1|I|C|240
8B7Y|1|I|A|241
8B7Y|1|I|G|242
8B7Y|1|I|U|243
8B7Y|1|I|A|244
8B7Y|1|I|G|245
*
8B7Y|1|I|C|253
8B7Y|1|I|G|254
8B7Y|1|I|A|255
8B7Y|1|I|A|256
8B7Y|1|I|C|257
8B7Y|1|I|G|258

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain T

50S ribosomal protein L15

Chain l

50S ribosomal protein L35