IL_8B7Y_076

3D structure

PDB id

8B7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the E.coli 70S ribosome in complex with the antibiotic Myxovalargin B.

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UAG*CAAAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B7Y_076 not in the Motif Atlas

Homologous match to IL_5J7L_254

Geometric discrepancy: 0.091

The information below is about IL_5J7L_254

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_69440.3

Basepair signature

cWW-L-R-cSH-cWW

Number of instances in this motif group

3

Unit IDs

8B7Y|1|I|U|293
8B7Y|1|I|A|294
8B7Y|1|I|G|295
*
8B7Y|1|I|C|343
8B7Y|1|I|A|344
8B7Y|1|I|A|345
8B7Y|1|I|A|346
8B7Y|1|I|A|347

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain c

50S ribosomal protein L24