IL_8B7Y_082

3D structure

PDB id

8B7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the E.coli 70S ribosome in complex with the antibiotic Myxovalargin B.

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

8B7Y|1|I|G|801, 8B7Y|1|I|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B7Y_082 not in the Motif Atlas

Geometric match to IL_7RQB_018

Geometric discrepancy: 0.0627

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

8B7Y|1|I|G|674
8B7Y|1|I|A|675
8B7Y|1|I|A|676
8B7Y|1|I|A|677
8B7Y|1|I|C|678
*
8B7Y|1|I|G|799
8B7Y|1|I|A|800
8B7Y|1|I|G|801
8B7Y|1|I|A|802
8B7Y|1|I|U|803
8B7Y|1|I|A|804
8B7Y|1|I|G|805
8B7Y|1|I|C|806

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L4

Chain T

50S ribosomal protein L15