IL_8B7Y_168

3D structure

PDB id

8B7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the E.coli 70S ribosome in complex with the antibiotic Myxovalargin B.

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAUAAG*CGAAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B7Y_168 not in the Motif Atlas

Homologous match to IL_5J7L_350

Geometric discrepancy: 0.0712

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

8B7Y|1|I|G|2737
8B7Y|1|I|A|2738
8B7Y|1|I|U|2739
8B7Y|1|I|A|2740
8B7Y|1|I|A|2741
8B7Y|1|I|G|2742
*
8B7Y|1|I|C|2762
8B7Y|1|I|G|2763
8B7Y|1|I|A|2764
8B7Y|1|I|A|2765
8B7Y|1|I|A|2766
8B7Y|1|I|C|2767

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain O

50S ribosomal protein L6

Chain R

50S ribosomal protein L13

Chain m

50S ribosomal protein L36