IL_8B7Y_180
3D structure
- PDB id
- 8B7Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the E.coli 70S ribosome in complex with the antibiotic Myxovalargin B.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- AGAAU*GGAAU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8B7Y_180 not in the Motif Atlas
- Homologous match to IL_5J7L_361
- Geometric discrepancy: 0.0849
- The information below is about IL_5J7L_361
- Detailed Annotation
- Triple non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_49751.4
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 16
Unit IDs
8B7Y|1|C|A|673
8B7Y|1|C|G|674
8B7Y|1|C|A|675
8B7Y|1|C|A|676
8B7Y|1|C|U|677
*
8B7Y|1|C|G|713
8B7Y|1|C|G|714
8B7Y|1|C|A|715
8B7Y|1|C|A|716
8B7Y|1|C|U|717
Current chains
- Chain C
- 16S ribosomal RNA
Nearby chains
- Chain 5
- 30S ribosomal protein S21
- Chain H
- 30S ribosomal protein S6
- Chain K
- 50S ribosomal protein L2
- Chain p
- 30S ribosomal protein S11
- Chain w
- 30S ribosomal protein S18
Coloring options: