IL_8B7Y_186

3D structure

PDB id

8B7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the E.coli 70S ribosome in complex with the antibiotic Myxovalargin B.

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B7Y_186 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.0693

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8B7Y|1|I|U|1851
8B7Y|1|I|U|1852
8B7Y|1|I|A|1853
8B7Y|1|I|A|1854
8B7Y|1|I|U|1855
8B7Y|1|I|U|1856
8B7Y|1|I|G|1857
8B7Y|1|I|A|1858
8B7Y|1|I|U|1859
8B7Y|1|I|G|1860
*
8B7Y|1|I|U|1882
8B7Y|1|I|U|1883
8B7Y|1|I|G|1884
8B7Y|1|I|A|1885
8B7Y|1|I|U|1886
8B7Y|1|I|C|1887
8B7Y|1|I|G|1888
8B7Y|1|I|A|1889
8B7Y|1|I|A|1890
8B7Y|1|I|G|1891

Current chains

Chain I

23S ribosomal RNA

Nearby chains