IL_8BF7_006

3D structure

PDB id

8BF7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

GGAACUG*CUAAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BF7_006 not in the Motif Atlas

Homologous match to IL_7A0S_006

Geometric discrepancy: 0.1132

The information below is about IL_7A0S_006

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

8BF7|1|0|G|188
8BF7|1|0|G|189
8BF7|1|0|A|190
8BF7|1|0|A|191
8BF7|1|0|C|192
8BF7|1|0|U|193
8BF7|1|0|G|194
*
8BF7|1|0|C|201
8BF7|1|0|U|202
8BF7|1|0|A|203
8BF7|1|0|A|204
8BF7|1|0|G|205
8BF7|1|0|U|206
8BF7|1|0|A|207
8BF7|1|0|C|208

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain I

50S ribosomal protein L15

Chain U

50S ribosomal protein L28