IL_8BF7_011

3D structure

PDB id

8BF7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

GAAC*GAGUGAAAAAGAAC

Length

18 nucleotides

Bulged bases

8BF7|1|0|A|504, 8BF7|1|0|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BF7_011 not in the Motif Atlas

Homologous match to IL_7RQB_014

Geometric discrepancy: 0.116

The information below is about IL_7RQB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60992.6

Basepair signature

cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L

Number of instances in this motif group

6

Unit IDs

8BF7|1|0|G|481
8BF7|1|0|A|482
8BF7|1|0|A|483
8BF7|1|0|C|484
*
8BF7|1|0|G|496
8BF7|1|0|A|497
8BF7|1|0|G|498
8BF7|1|0|U|499
8BF7|1|0|G|500
8BF7|1|0|A|501
8BF7|1|0|A|502
8BF7|1|0|A|503
8BF7|1|0|A|504
8BF7|1|0|A|505
8BF7|1|0|G|506
8BF7|1|0|A|507
8BF7|1|0|A|508
8BF7|1|0|C|509

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain P

50S ribosomal protein L22

Chain R

50S ribosomal protein L24