IL_8BF7_016

3D structure

PDB id

8BF7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

8BF7|1|0|G|801, 8BF7|1|0|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BF7_016 not in the Motif Atlas

Homologous match to IL_5J7L_260

Geometric discrepancy: 0.119

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

8BF7|1|0|G|674
8BF7|1|0|A|675
8BF7|1|0|A|676
8BF7|1|0|A|677
8BF7|1|0|C|678
*
8BF7|1|0|G|799
8BF7|1|0|A|800
8BF7|1|0|G|801
8BF7|1|0|A|802
8BF7|1|0|U|803
8BF7|1|0|A|804
8BF7|1|0|G|805
8BF7|1|0|C|806

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain C

50S ribosomal protein L4

Chain I

50S ribosomal protein L15