3D structure

PDB id
8BF7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site
Experimental method
ELECTRON MICROSCOPY
Resolution
2.33 Å

Loop

Sequence
GGGAAAC*GGAAGAUGUAACGGGGC
Length
24 nucleotides
Bulged bases
8BF7|1|0|A|1127, 8BF7|1|0|U|1130
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8BF7_036 not in the Motif Atlas
Geometric match to IL_4WF9_040
Geometric discrepancy: 0.1358
The information below is about IL_4WF9_040
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_50715.3
Basepair signature
cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
Number of instances in this motif group
4

Unit IDs

8BF7|1|0|G|1024
8BF7|1|0|G|1025
8BF7|1|0|G|1026
8BF7|1|0|A|1027
8BF7|1|0|A|1028
8BF7|1|0|A|1029
8BF7|1|0|C|1030
*
8BF7|1|0|G|1124
8BF7|1|0|G|1125
8BF7|1|0|A|1126
8BF7|1|0|A|1127
8BF7|1|0|G|1128
8BF7|1|0|A|1129
8BF7|1|0|U|1130
8BF7|1|0|G|1131
8BF7|1|0|U|1132
8BF7|1|0|A|1133
8BF7|1|0|A|1134
8BF7|1|0|C|1135
8BF7|1|0|G|1136
8BF7|1|0|G|1137
8BF7|1|0|G|1138
8BF7|1|0|G|1139
8BF7|1|0|C|1140

Current chains

Chain 0
23S rRNA RRLG-RRNA

Nearby chains

Chain B
50S ribosomal protein L3
Chain G
50S ribosomal protein L13
Chain J
50S ribosomal protein L16
Chain e
50S ribosomal protein L36

Coloring options:


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