IL_8BF7_045

3D structure

PDB id

8BF7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

CUAAG*CGAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BF7_045 not in the Motif Atlas

Homologous match to IL_5J7L_292

Geometric discrepancy: 0.1174

The information below is about IL_5J7L_292

Detailed Annotation

UAA/GAN

Broad Annotation

UAA/GAN

Motif group

IL_89021.2

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

6

Unit IDs

8BF7|1|0|C|1351
8BF7|1|0|U|1352
8BF7|1|0|A|1353
8BF7|1|0|A|1354
8BF7|1|0|G|1355
*
8BF7|1|0|C|1376
8BF7|1|0|G|1377
8BF7|1|0|A|1378
8BF7|1|0|U|1379
8BF7|1|0|G|1380

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain A

50S ribosomal protein L2

Chain c

50S ribosomal protein L34