3D structure

PDB id
8BF7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site
Experimental method
ELECTRON MICROSCOPY
Resolution
2.33 Å

Loop

Sequence
GAAG*CCUGC
Length
9 nucleotides
Bulged bases
8BF7|1|0|U|1559
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8BF7_049 not in the Motif Atlas
Homologous match to IL_5J7L_296
Geometric discrepancy: 0.1488
The information below is about IL_5J7L_296
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_58112.2
Basepair signature
cWW-cWW-L-R-cWW
Number of instances in this motif group
4

Unit IDs

8BF7|1|0|G|1432
8BF7|1|0|A|1433
8BF7|1|0|A|1434
8BF7|1|0|G|1435
*
8BF7|1|0|C|1557
8BF7|1|0|C|1558
8BF7|1|0|U|1559
8BF7|1|0|G|1560
8BF7|1|0|C|1561

Current chains

Chain 0
23S rRNA RRLG-RRNA

Nearby chains

Chain A
50S ribosomal protein L2

Coloring options:


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