IL_8BF7_076

3D structure

PDB id

8BF7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

AA*UACU

Length

6 nucleotides

Bulged bases

8BF7|1|0|A|2439

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BF7_076 not in the Motif Atlas

Homologous match to IL_7RQB_081

Geometric discrepancy: 0.129

The information below is about IL_7RQB_081

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_42622.4

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

33

Unit IDs

8BF7|1|0|A|2070
8BF7|1|0|A|2071
*
8BF7|1|0|U|2438
8BF7|1|0|A|2439
8BF7|1|0|C|2440
8BF7|1|0|U|2441

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain 4

Transfer RNA; tRNA

Chain A

50S ribosomal protein L2