IL_8BF7_125

3D structure

PDB id

8BF7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

GAUUAG*CGACGAUC

Length

14 nucleotides

Bulged bases

8BF7|1|2|U|244, 8BF7|1|2|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BF7_125 not in the Motif Atlas

Homologous match to IL_5J7L_014

Geometric discrepancy: 0.1381

The information below is about IL_5J7L_014

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

8BF7|1|2|G|242
8BF7|1|2|A|243
8BF7|1|2|U|244
8BF7|1|2|U|245
8BF7|1|2|A|246
8BF7|1|2|G|247
*
8BF7|1|2|C|277
8BF7|1|2|G|278
8BF7|1|2|A|279
8BF7|1|2|C|280
8BF7|1|2|G|281
8BF7|1|2|A|282
8BF7|1|2|U|283
8BF7|1|2|C|284

Current chains

Chain 2

16S rRNA RRSB-RRNA

Nearby chains

Chain p

30S ribosomal protein S12

Chain u

30S ribosomal protein S17