IL_8BF7_137

3D structure

PDB id

8BF7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

8BF7|1|2|A|572

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BF7_137 not in the Motif Atlas

Homologous match to IL_4LFB_022

Geometric discrepancy: 0.1536

The information below is about IL_4LFB_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.6

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

4

Unit IDs

8BF7|1|2|C|569
8BF7|1|2|G|570
8BF7|1|2|U|571
8BF7|1|2|A|572
8BF7|1|2|A|573
8BF7|1|2|A|574
8BF7|1|2|G|575
*
8BF7|1|2|C|880
8BF7|1|2|G|881

Current chains

Chain 2

16S rRNA RRSB-RRNA

Nearby chains

Chain p

30S ribosomal protein S12

Chain u

30S ribosomal protein S17