3D structure

PDB id
8BF7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site
Experimental method
ELECTRON MICROSCOPY
Resolution
2.33 Å

Loop

Sequence
GGAGUACG*UAAAAC
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8BF7_151 not in the Motif Atlas
Homologous match to IL_5J7L_038
Geometric discrepancy: 0.1196
The information below is about IL_5J7L_038
Detailed Annotation
8x6 Sarcin-Ricin with inserted Y; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_41756.4
Basepair signature
cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
Number of instances in this motif group
4

Unit IDs

8BF7|1|2|G|887
8BF7|1|2|G|888
8BF7|1|2|A|889
8BF7|1|2|G|890
8BF7|1|2|U|891
8BF7|1|2|A|892
8BF7|1|2|C|893
8BF7|1|2|G|894
*
8BF7|1|2|U|905
8BF7|1|2|A|906
8BF7|1|2|A|907
8BF7|1|2|A|908
8BF7|1|2|A|909
8BF7|1|2|C|910

Current chains

Chain 2
16S rRNA RRSB-RRNA

Nearby chains

Chain p
30S ribosomal protein S12

Coloring options:


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