IL_8BGE_011

3D structure

PDB id

8BGE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAm6A mRNA codon in the A-site after uncompleted di-peptide formation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.11 Å

Loop

Sequence

GAAC*GAGUGAAAAAGAAC

Length

18 nucleotides

Bulged bases

8BGE|1|0|A|504, 8BGE|1|0|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BGE_011 not in the Motif Atlas

Homologous match to IL_7RQB_014

Geometric discrepancy: 0.1153

The information below is about IL_7RQB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60992.6

Basepair signature

cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L

Number of instances in this motif group

6

Unit IDs

8BGE|1|0|G|481
8BGE|1|0|A|482
8BGE|1|0|A|483
8BGE|1|0|C|484
*
8BGE|1|0|G|496
8BGE|1|0|A|497
8BGE|1|0|G|498
8BGE|1|0|U|499
8BGE|1|0|G|500
8BGE|1|0|A|501
8BGE|1|0|A|502
8BGE|1|0|A|503
8BGE|1|0|A|504
8BGE|1|0|A|505
8BGE|1|0|G|506
8BGE|1|0|A|507
8BGE|1|0|A|508
8BGE|1|0|C|509

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain P

50S ribosomal protein L22

Chain R

50S ribosomal protein L24