IL_8BGE_016

3D structure

PDB id

8BGE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAm6A mRNA codon in the A-site after uncompleted di-peptide formation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.11 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

8BGE|1|0|G|801, 8BGE|1|0|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BGE_016 not in the Motif Atlas

Homologous match to IL_5J7L_260

Geometric discrepancy: 0.1052

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

8BGE|1|0|G|674
8BGE|1|0|A|675
8BGE|1|0|A|676
8BGE|1|0|A|677
8BGE|1|0|C|678
*
8BGE|1|0|G|799
8BGE|1|0|A|800
8BGE|1|0|G|801
8BGE|1|0|A|802
8BGE|1|0|U|803
8BGE|1|0|A|804
8BGE|1|0|G|805
8BGE|1|0|C|806

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain C

50S ribosomal protein L4

Chain I

50S ribosomal protein L15