IL_8BGE_035

3D structure

PDB id

8BGE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAm6A mRNA codon in the A-site after uncompleted di-peptide formation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.11 Å

Loop

Sequence

UCCCAAAG*CA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BGE_035 not in the Motif Atlas

Homologous match to IL_5J7L_278

Geometric discrepancy: 0.1508

The information below is about IL_5J7L_278

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

8BGE|1|0|U|1004
8BGE|1|0|C|1005
8BGE|1|0|C|1006
8BGE|1|0|C|1007
8BGE|1|0|A|1008
8BGE|1|0|A|1009
8BGE|1|0|A|1010
8BGE|1|0|G|1011
*
8BGE|1|0|C|1150
8BGE|1|0|A|1151

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain G

50S ribosomal protein L13

Chain N

50S ribosomal protein L20