IL_8BGE_042

3D structure

PDB id

8BGE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAm6A mRNA codon in the A-site after uncompleted di-peptide formation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.11 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

8BGE|1|0|C|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BGE_042 not in the Motif Atlas

Homologous match to IL_5J7L_288

Geometric discrepancy: 0.1

The information below is about IL_5J7L_288

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

8BGE|1|0|C|1208
8BGE|1|0|U|1209
8BGE|1|0|G|1210
8BGE|1|0|C|1211
8BGE|1|0|G|1212
8BGE|1|0|A|1213
8BGE|1|0|A|1214
8BGE|1|0|G|1215
*
8BGE|1|0|U|1234
8BGE|1|0|G|1235
8BGE|1|0|G|1236
8BGE|1|0|A|1237
8BGE|1|0|G|1238

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain N

50S ribosomal protein L20