IL_8BGE_121

3D structure

PDB id

8BGE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAm6A mRNA codon in the A-site after uncompleted di-peptide formation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.11 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

8BGE|1|2|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BGE_121 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1538

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

8BGE|1|2|G|147
8BGE|1|2|G|148
8BGE|1|2|A|149
8BGE|1|2|U|150
8BGE|1|2|A|151
8BGE|1|2|A|152
8BGE|1|2|C|153
*
8BGE|1|2|G|168
8BGE|1|2|C|169
8BGE|1|2|U|170
8BGE|1|2|A|171
8BGE|1|2|A|172
8BGE|1|2|U|173
8BGE|1|2|A|174
8BGE|1|2|C|175

Current chains

Chain 2

16S rRNA RRSB-RRNA

Nearby chains

Chain x

30S ribosomal protein S20