IL_8BGE_123

3D structure

PDB id

8BGE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAm6A mRNA codon in the A-site after uncompleted di-peptide formation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.11 Å

Loop

Sequence

GAUUAG*CGACGAUC

Length

14 nucleotides

Bulged bases

8BGE|1|2|U|244, 8BGE|1|2|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BGE_123 not in the Motif Atlas

Homologous match to IL_5J7L_014

Geometric discrepancy: 0.1289

The information below is about IL_5J7L_014

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

8BGE|1|2|G|242
8BGE|1|2|A|243
8BGE|1|2|U|244
8BGE|1|2|U|245
8BGE|1|2|A|246
8BGE|1|2|G|247
*
8BGE|1|2|C|277
8BGE|1|2|G|278
8BGE|1|2|A|279
8BGE|1|2|C|280
8BGE|1|2|G|281
8BGE|1|2|A|282
8BGE|1|2|U|283
8BGE|1|2|C|284

Current chains

Chain 2

16S rRNA RRSB-RRNA

Nearby chains

Chain p

30S ribosomal protein S12

Chain u

30S ribosomal protein S17