IL_8BGE_151

3D structure

PDB id

8BGE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAm6A mRNA codon in the A-site after uncompleted di-peptide formation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.11 Å

Loop

Sequence

GCA*UUCCC

Length

8 nucleotides

Bulged bases

8BGE|1|2|C|934

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BGE_151 not in the Motif Atlas

Homologous match to IL_4LFB_037

Geometric discrepancy: 0.1788

The information below is about IL_4LFB_037

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_61370.1

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

8BGE|1|2|G|933
8BGE|1|2|C|934
8BGE|1|2|A|935
*
8BGE|1|2|U|1380
8BGE|1|2|U|1381
8BGE|1|2|C|1382
8BGE|1|2|C|1383
8BGE|1|2|C|1384

Current chains

Chain 2

16S rRNA RRSB-RRNA

Nearby chains

Chain 4

Transfer RNA; tRNA

Chain k

30S ribosomal protein S7

Chain m

30S ribosomal protein S9