IL_8BGE_180

3D structure

PDB id

8BGE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAm6A mRNA codon in the A-site after uncompleted di-peptide formation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.11 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BGE_180 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.121

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8BGE|1|0|U|1851
8BGE|1|0|U|1852
8BGE|1|0|A|1853
8BGE|1|0|A|1854
8BGE|1|0|U|1855
8BGE|1|0|U|1856
8BGE|1|0|G|1857
8BGE|1|0|A|1858
8BGE|1|0|U|1859
8BGE|1|0|G|1860
*
8BGE|1|0|U|1882
8BGE|1|0|U|1883
8BGE|1|0|G|1884
8BGE|1|0|A|1885
8BGE|1|0|U|1886
8BGE|1|0|C|1887
8BGE|1|0|G|1888
8BGE|1|0|A|1889
8BGE|1|0|A|1890
8BGE|1|0|G|1891

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains