IL_8BGH_006

3D structure

PDB id

8BGH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAA mRNA codon in the A-site after uncompleted di-peptide formation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

GGAACUG*CUAAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BGH_006 not in the Motif Atlas

Homologous match to IL_7A0S_006

Geometric discrepancy: 0.1174

The information below is about IL_7A0S_006

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.3

Basepair signature

cWW-cWW-tSH-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

20

Unit IDs

8BGH|1|0|G|188
8BGH|1|0|G|189
8BGH|1|0|A|190
8BGH|1|0|A|191
8BGH|1|0|C|192
8BGH|1|0|U|193
8BGH|1|0|G|194
*
8BGH|1|0|C|201
8BGH|1|0|U|202
8BGH|1|0|A|203
8BGH|1|0|A|204
8BGH|1|0|G|205
8BGH|1|0|U|206
8BGH|1|0|A|207
8BGH|1|0|C|208

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain I

50S ribosomal protein L15

Chain U

50S ribosomal protein L28