IL_8BGH_012

3D structure

PDB id

8BGH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAA mRNA codon in the A-site after uncompleted di-peptide formation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

GAAC*GAGUGAAAAAGAAC

Length

18 nucleotides

Bulged bases

8BGH|1|0|A|504, 8BGH|1|0|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BGH_012 not in the Motif Atlas

Homologous match to IL_7RQB_014

Geometric discrepancy: 0.1296

The information below is about IL_7RQB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60992.6

Basepair signature

cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L

Number of instances in this motif group

6

Unit IDs

8BGH|1|0|G|481
8BGH|1|0|A|482
8BGH|1|0|A|483
8BGH|1|0|C|484
*
8BGH|1|0|G|496
8BGH|1|0|A|497
8BGH|1|0|G|498
8BGH|1|0|U|499
8BGH|1|0|G|500
8BGH|1|0|A|501
8BGH|1|0|A|502
8BGH|1|0|A|503
8BGH|1|0|A|504
8BGH|1|0|A|505
8BGH|1|0|G|506
8BGH|1|0|A|507
8BGH|1|0|A|508
8BGH|1|0|C|509

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain P

50S ribosomal protein L22

Chain R

50S ribosomal protein L24