3D structure

PDB id
8BGH (explore in PDB, NAKB, or RNA 3D Hub)
Description
Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAA mRNA codon in the A-site after uncompleted di-peptide formation
Experimental method
ELECTRON MICROSCOPY
Resolution
2.88 Å

Loop

Sequence
CGU*AGUG
Length
7 nucleotides
Bulged bases
8BGH|1|0|G|1248
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8BGH_043 not in the Motif Atlas
Homologous match to IL_5J7L_286
Geometric discrepancy: 0.146
The information below is about IL_5J7L_286
Detailed Annotation
Isolated cWS basepair
Broad Annotation
No text annotation
Motif group
IL_42997.3
Basepair signature
cWW-L-R-cWW
Number of instances in this motif group
20

Unit IDs

8BGH|1|0|C|1196
8BGH|1|0|G|1197
8BGH|1|0|U|1198
*
8BGH|1|0|A|1247
8BGH|1|0|G|1248
8BGH|1|0|U|1249
8BGH|1|0|G|1250

Current chains

Chain 0
23S rRNA RRLG-RRNA

Nearby chains

Chain C
50S ribosomal protein L4
Chain I
50S ribosomal protein L15
Chain N
50S ribosomal protein L20

Coloring options:


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