IL_8BGH_093

3D structure

PDB id

8BGH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAA mRNA codon in the A-site after uncompleted di-peptide formation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

AUA*UGUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BGH_093 not in the Motif Atlas

Homologous match to IL_7A0S_086

Geometric discrepancy: 0.2207

The information below is about IL_7A0S_086

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_36931.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

23

Unit IDs

8BGH|1|0|A|2459
8BGH|1|0|U|2460
8BGH|1|0|A|2461
*
8BGH|1|0|U|2489
8BGH|1|0|G|2490
8BGH|1|0|U|2491
8BGH|1|0|U|2492
8BGH|1|0|U|2493

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain J

50S ribosomal protein L16