IL_8BGH_127

3D structure

PDB id

8BGH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAA mRNA codon in the A-site after uncompleted di-peptide formation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

8BGH|1|2|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BGH_127 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.203

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

8BGH|1|2|G|147
8BGH|1|2|G|148
8BGH|1|2|A|149
8BGH|1|2|U|150
8BGH|1|2|A|151
8BGH|1|2|A|152
8BGH|1|2|C|153
*
8BGH|1|2|G|168
8BGH|1|2|C|169
8BGH|1|2|U|170
8BGH|1|2|A|171
8BGH|1|2|A|172
8BGH|1|2|U|173
8BGH|1|2|A|174
8BGH|1|2|C|175

Current chains

Chain 2

16S rRNA RRSB-RRNA

Nearby chains

Chain x

30S ribosomal protein S20