IL_8BGH_140

3D structure

PDB id

8BGH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAA mRNA codon in the A-site after uncompleted di-peptide formation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

GUGCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

8BGH|1|2|A|532, 8BGH|1|2|U|534, 8BGH|1|2|A|535

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BGH_140 not in the Motif Atlas

Homologous match to IL_4LFB_021

Geometric discrepancy: 0.381

The information below is about IL_4LFB_021

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_52042.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

8BGH|1|2|G|515
8BGH|1|2|U|516
8BGH|1|2|G|517
8BGH|1|2|C|518
8BGH|1|2|C|519
8BGH|1|2|A|520
8BGH|1|2|G|521
*
8BGH|1|2|C|528
8BGH|1|2|G|529
8BGH|1|2|G|530
8BGH|1|2|U|531
8BGH|1|2|A|532
8BGH|1|2|A|533
8BGH|1|2|U|534
8BGH|1|2|A|535
8BGH|1|2|C|536

Current chains

Chain 2

16S rRNA RRSB-RRNA

Nearby chains

Chain g

30S ribosomal protein S3

Chain p

30S ribosomal protein S12